Difference between revisions of "WG5 Project 01"

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== Project Team ==
 
== Project Team ==
; Project Lead: Kevin Kane
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; Project Lead: Rebeka Revis
 
 
; Project Members:
 
  
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; Project Members:
  
 
== Project Description ==
 
== Project Description ==
 
; Project Name:  Look for existing scripts and store them in the repository  
 
; Project Name:  Look for existing scripts and store them in the repository  
; Description:  The aim of the FDA/PhUSE repository is to make available a set of scripts/tools/programs for data manipulation, reporting and analysis of medical data.  There are currently many such tools already available on the internet, but they are disparate and may not be easy to locate.  This project aims to bring as many of these together into our open source Google Code repository, making them more accessible to the community of statisticians and programmers across pharma, regulators and academia.  Key tasks will be identifying, contacting and negotiating with the current owners of the scripts/tools/programs to bring them into the FDA/PhUSE repository.
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; Description:  The aim of the FDA/PhUSE repository is to make available a set of scripts/tools/programs for data manipulation, reporting and analysis of medical data.  There are currently many such tools already available on the internet, but they are disparate and may not be easy to locate.  This project aims to bring as many of these together into our open source Code repository, making them more accessible to the community of statisticians and programmers across pharma, regulators and academia.  Key tasks will be identifying, contacting and negotiating with the current owners of the scripts/tools/programs to bring them into the FDA/PhUSE repository.
  
 
== Project Progress ==
 
== Project Progress ==
  
There are two main tasks:
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There is currently one main task:
  
TASK 1. Contact authors of existing sets of scripts that are freely available in the internet and ask for them to upload their scripts to the repository. Here is a status of the progress with this task:
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TASK 1. Review FDA contributed scripts and make them available in the Code Repository.
  
* CTSPedia (https://www.ctspedia.org/do/view/CTSpedia)
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'''FDA have provided reports for Demographics, Adverse Events, Disposition, Labs, and MedDRA at a Glance'''
  
: Mat Soukup (FDA) - has offered scripts to be uploaded, asked for help with uploading process due to time contraints.
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*  The contributed scripts are being updated to become more user-friendly and be contained in a single package.
: Richard Anziano (Pfizer) - has offered scripts to be uploaded, asked for help with uploading process due to time contraints.
 
: Robert Gordon (J&J) - has offered scripts to be uploaded, asked for help with uploading process due to time contraints (not some references to other authors code in these scripts).
 
: Max Cherry (GSK) - awaiting response
 
: Susan Duke (GSK) - awaiting response
 
: Antonio Paredes (FDA) - awaiting response
 
: Qi Jiang (Amgen)
 
: Frank Harrell (Vanderbilt Uni) - needs further discussion - "to figure out how to cross-link various resources without duplicating code.  We also need to look closer at Github and their code snipped repository capability."
 
  
* CTS-TEMPLATE "R package for Clinical Trial Simulation", Donato Teutonico, https://code.google.com/p/cts-template
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* The scripts will be reviewed by people in Project 01 to test on a variety of environments and in several companies.
  
: awaiting response
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== Project Meetings ==
  
* MSTOOLKIT "R package for Clinical Trial Simulation", Mike Smith, https://r-forge.r-project.org/projects/mstoolkit/
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[[SS P01 14JUN2016 Meeting]]
  
: awaiting response
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[[SS P01 19JUL2016 Meeting]]
  
* Non-parametric confidence intervals SAS macro, Pinal Patel (PHASTAR) (from a PSI conference poster)
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[[SS P01 17AUG2016 Meeting]]
  
: having difficulty with upload procedure
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[[SS P01 29SEP2016 Meeting]]
  
* SAS Macro to produce mock tables, Yao Huang, PHARMASUG China poster
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[[SS P01 17NOV2016 Meeting]]
  
: awaiting response
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[[SS P01 01DEC2016 Meeting]]
  
TASK 2. Liaise with organisations who may have scripts that they could add to the script repository.  The following is a list of possible "leads".  This list does not mean that the organisation may have scripts to donate, or may be prepared to donate them, but just that there is a possibility and it is being investigated:
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[[SS P01 01JAN2017 Meeting]]
  
# Linda Collins (Pharmastat) mentioned in a PhUSE teleconf that she may have some scripts to share.
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[[SS P01 08FEB2017 Meeting]]
# SAS : Liaising with various people from SAS to determine if there is interest in donating scripts
 
  
== Project Meetings ==
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[[SS P01 20APR2017 Meeting]]
  
 
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[[Category:WG5]]
 
[[Category:WG5]]
[[Category:Project]]
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[[Category:Project 01]]
[[Category:Standard Script]]
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[[Category:Standard Scripts]]
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[[Category:ActiveProject]]
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Latest revision as of 10:17, 4 January 2018


Project Team

Project Lead
Rebeka Revis
Project Members

Project Description

Project Name
Look for existing scripts and store them in the repository
Description
The aim of the FDA/PhUSE repository is to make available a set of scripts/tools/programs for data manipulation, reporting and analysis of medical data. There are currently many such tools already available on the internet, but they are disparate and may not be easy to locate. This project aims to bring as many of these together into our open source Code repository, making them more accessible to the community of statisticians and programmers across pharma, regulators and academia. Key tasks will be identifying, contacting and negotiating with the current owners of the scripts/tools/programs to bring them into the FDA/PhUSE repository.

Project Progress

There is currently one main task:

TASK 1. Review FDA contributed scripts and make them available in the Code Repository.

FDA have provided reports for Demographics, Adverse Events, Disposition, Labs, and MedDRA at a Glance

  • The contributed scripts are being updated to become more user-friendly and be contained in a single package.
  • The scripts will be reviewed by people in Project 01 to test on a variety of environments and in several companies.

Project Meetings

SS P01 14JUN2016 Meeting

SS P01 19JUL2016 Meeting

SS P01 17AUG2016 Meeting

SS P01 29SEP2016 Meeting

SS P01 17NOV2016 Meeting

SS P01 01DEC2016 Meeting

SS P01 01JAN2017 Meeting

SS P01 08FEB2017 Meeting

SS P01 20APR2017 Meeting


Last revised by WendyDobson,01/4/2018