User Guide for Standard Script Repository

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Revision as of 07:11, 7 January 2016 by DanteDT (talk | contribs)
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Welcome to the phuse-scripts repository. This site hosts standard scripts for data transformations and analyses across and/or within a therapeutic area and exploratory analysis. Our goal is to standardize analyses across the industry, but also include examples of what can be done with a standardized data set. We aim to establish this repository as the place to collaborate and share between industry and regulators.

How to get involved

Repository Maintainer
Hanming Tu and Kevin Kane : contact on
Current members
Steps to join
  1. Join the Free PhUSE mailing list to receive updates
  2. Sign up for the PhUSE working group mailings
    1. Go to
    2. Join this group: "CSS WG5: Developing Standard Scripts" (
  3. Sign up to be a contributor or committer in the script repository (GitHub account required)
    1. Send an email to one of the repository maintainers to request to join the PhUSE repository
    2. Go to repository at and start interacting

Adding a script

There are two methods to add a script:

  1. using browser or
  2. using a git client such as the GitHubs client.

Repository structure is a work-in-progress, with the proposed structure published in the repository.

Users should add documentation when adding a script. We have templates for:

  • User documentation (locate in github)
  • Script specifications (locate in github)

We have naming conventions:

  • Naming conventions (locate in github)

Please use these documents for new scripts. and adhere to naming conventions.

Last revised by DanteDT,01/7/2016