SS P03 20JUL2015
Dirk from Germany
Mike and Chris did not send an agenda prior to the meeting.
Chris will not attend; advised:
Just let Jeno roll with it and maybe get an update from Rebecca and Gustav. I will be happy to implement whatever they come up with for GitHub...
Jeno: has talked w/Chris over the last few weeks about how to store test data, and it sounds like if you do updates to a csv file in Github, it will be editable and track changes (commit, etc.) - but it might start to get complex, hard to refer back easily to earlier versions.
We think we want to store CSV files in Github - put another version there using different or different folder - notes in Github or README file.
(Discussion about how to store/version CSV files)
Gustav sent a draft he had worked on w/Rebeka.
At bottom is an ASCII version of this draft.
Is there a way to track qualification stage of a program/script?
Will end users use Github directly?
Mike talked about linking off phuse.eu, linking to the script index page - to download/click through.
Will SAS and R programmers get familiar with Github to navigate through themselves?
Would it be an option to do a pilot where we take a certain - one paper, and create the folders, etc. - to create a
Need to make a decision? Either what Gustav/Rebeka have proposed - or completely based on topics?
distallation of the proposal:
- Whitepaper topic
- Adverse events
- Qualified Programs (one for
- Adverse events
this shows 2 contributed files, 1 qualified file
/ae/contributed/meddra/file1.sas /ae/contributed/meddra/file2.sas /ae/qualified/meddra/file1.sas
/ae/meddra/contributed/file1.sas /ae/meddra/contributed/file2.sas /ae/meddra/qualified/file1.sas
Is it more important to show github-level users contributed or qualified then subtopic, or more important to show subtopic then contributed/qualified?
• Whitepaper topic o Adverse events (whitepaper subtopic) Contributed (These have not gone through the qualification process. The address the same topic as the whitepapers, but the output is not used directly in the whitepapers.) • Severity (put the programs at this folder level) o Output o Templates (We’re not sure what these are used for. We put them in with their corresponding program folder) • Toxicity o Output o Templates • MedDRA o Output o Templates Documentation (contains YML, user guides or any other documentation for the scripts) Qualified Programs (SAS and R programs. These have gone through the qualification process for whitepapers. We could call this qualified programs since most people are used to the term program instead of scripts) • Output (Give an example program output. We can see the display in the whitepaper, but having a snapshot of the actual programs’ outputs are helpful) Whitepaper (Have copy of actual white papers or a link) o Demographics (whitepaper subtopic) There are 2 folders for the contributed (DM and Demographics). Are there differences between them? This would follow a similar structure as the adverse events.
For Contributed output, how much will our group do to the scripts? Will we actually have output? Will they go through the qualification process?